Published November 23, 2023
| Version v1
Journal article
Restricted
How complex is the Naineris setosa species complex? First integrative study of a presumed cosmopolitan and invasive annelid (Sedentaria: Orbiniidae)
Creators
- 1. Graduate program in Oceanic Coastal Systems (PGSISCO), Federal University of Paraná, Pontal do Paraná, Paraná, Brazil. https://orcid.org/0000-0002-3509-0187
- 2. Department of Natural History, University Museum of Bergen, University of Bergen, Allégaten 41, 5007 Bergen, Norway
Description
Álvarez, Ricardo, Budaeva, Nataliya (2023): How complex is the Naineris setosa species complex? First integrative study of a presumed cosmopolitan and invasive annelid (Sedentaria: Orbiniidae). Zootaxa 5375 (3): 349-378, DOI: 10.11646/zootaxa.5375.3.3, URL: https://mapress.com/zt/article/download/zootaxa.5375.3.3/52334
Files
Linked records
Additional details
Identifiers
- URL
- https://www.checklistbank.org/dataset/278920
- LSID
- urn:lsid:zoobank.org:pub:4EBF95D8-B03D-4859-B127-AD0840DA10FB
- LSID
- urn:lsid:plazi.org:pub:FFC04663FFCAFFFFFFBEFFF39B44FFA5
- URL
- http://publication.plazi.org/id/FFC04663FFCAFFFFFFBEFFF39B44FFA5
References
- Amaral, A.C.Z., Nallin, S.A.H., Steneir, T.M., Forroni, T. de O. & Gomes Filho, D. (2006) Catalogo das Especies de Annelida Polychaeta do Brasil. Available from: http://www.ib.unicamp.br/museu_zoologia/files/lab_museu_zoologia/Catalogo_ Polychaeta_Amaral_et_al_2012.pdf (accessed 4 July 2023)
- Arduini, D., Borghese, J., Gravina, M. F., Trani, R., Longo, C., Pierri, C. & Giangrande, A. (2022) Biofouling Role in Mariculture Environment Restoration: An Example in the Mar Grande of Taranto (Mediterranean Sea). Frontiers in Marine Science, 9, 842616. https://doi.org/10.3389/fmars.2022.842616
- Atzori, G., Lopez, E., Addis, P., Sabatini, A. & Cabiddu, S. (2016) First record of the alien polychaete Naineris setosa (Scolecida; Orbiniidae) in Tyrrhenian Sea (Western Mediterranean). Marine Biodiversity Records, 9 (1), 1-6. https://doi.org/10.1186/s41200-016-0017-6
- Blainville, H. (1828) Dictionnaire des Sciences naturelles, dans lequel on traite methodiquement des differens etres de la nature, consideres soit en eux-memes, d'apres l'etat actuel de nos connoissances, soit relativement a l'utilite qu'en peuvent retirer la medicine, l'agriculture, le commerce et les arts. Suivi d'une biographie des plus celebres naturalistes. FG Levrault, Strasbourg and Paris. [unknown pagination]
- Blake, J.A. (2000) A new genus and species of polychaete worm (Family Orbiniidae) from methane seeps in the Gulf of Mexico, interrelationships of the genera of Orbiniidae. Cahiers de Biologie Marine, 41 (4), 435-449. https://doi.org/10.21411/CBM.A.84F1D61E
- Blake, J.A. (2017) Polychaeta Orbiniidae from Antarctica, the Southern Ocean, the Abyssal Pacific Ocean, and off South America. Zootaxa, 4218 (1), 1-145. https://doi.org/10.11646/zootaxa.4218.1.1
- Blake, J.A. (2020) New species and records of deep-water Orbiniidae (Annelida, Polychaeta) from the Eastern Pacific continental slope, abyssal Pacific Ocean, and the South China Sea. Zootaxa, 4730 (1), 1-61. https://doi.org/10.11646/zootaxa.4730.1.1
- Blake, J.A. (2021) New species and records of Orbiniidae (Annelida, Polychaeta) from continental shelf and slope depths of the Western North Atlantic Ocean. Zootaxa, 4930 (1), 1-123. https://doi.org/10.11646/zootaxa.4930.1.1
- Blake, J.A. & Giangrande, A. (2011) Naineris setosa (Verrill) (Polychaeta, Orbiniidae), an American subtropical-tropical polychaete collected from an aquaculture facility in Brindisi (Adriatic Sea, Italy): A possible alien species. Italian Journal of Zoology, 78 (Supplement), 20-26. https://doi.org/10.1080/11250003.2011.577982
- Bleidorn, C. (2005) Phylogenetic relationships and evolution of Orbiniidae (Annelida, Polychaeta) based on molecular data. Zoological Journal of the Linnean Society, 144 (1), 59-73. https://doi.org/10.1111/j.1096-3642.2005.00160.x
- Bleidorn, C., Hill, N., Erseus, C. & Tiedemann, R. (2009) On the role of character loss in orbiniid phylogeny (Annelida): Molecules vs. morphology. Molecular Phylogenetics and Evolution, 52 (1), 57-69. https://doi.org/10.1016/j.ympev.2009.03.022
- Bleidorn, C. (2017) Phylogenomics: an introduction. Springer, Cham, 217 pp. https://doi.org/10.1007/978-3-319-54064-1
- Carr, C.M., Hardy, S.M., Brown, T.M., Macdonald, T.A. & Hebert, P.D.N. (2011) A tri-oceanic perspective: DNA Barcoding reveals geographic structure and cryptic diversity in Canadian polychaetes. PLoS ONE, 6 (7), e22232. https://doi.org/10.1371/journal.pone.0022232
- Cinar, M.E. (2013) Alien polychaete species worldwide: current status and their impacts. Journal of the Marine Biological Association of the United Kingdom, 93 (5), 1257-1278. https://doi.org/10.1017/S0025315412001646
- Clement, M., Snell, Q., Walker, P., Posada, D. & Crandall, K. (2002) TCS: estimating gene genealogies. In: Proceedings 16th International Parallel and Distributed Processing Symposium, Fort Lauderdale, Florida, 15-19 April 2002, 0184.
- Davalos, L.M., Cirranello, A.L., Geisler, J.H. & Simmons, N.B. (2012) Understanding phylogenetic incongruence: lessons from phyllostomid bats. Biological Reviews, 87 (4), 991-1024. https://doi.org/10.1111/j.1469-185X.2012.00240.x
- Day, J.H. (1961) The polychaet fauna of South Africa. Part 6. Sedentary species dredged off Cape coasts with a few new records from the shore. Zoological Journal of the Linnean Society, 44 (299), 463-560. https://doi.org/10.1111/j.1096-3642.1961.tb01623.x
- Day, J.H. (1963) The polychaete fauna of South Africa. Part 8: New species and records from grab samples and dredgings. Bulletin of the British Museum (Natural History), Series Zoology, 10 (7), 381-445. https://doi.org/10.5962/bhl.part.20530
- Day, J.H. (1965) Israel South Red Sea Expedition, 1962, Reports no. 7. Some Polychaeta from the Israel South Red Sea Expedition, 1962. Bulletin of the Sea Fisheries Research Station, Haifa, 38, 15-27.
- Day, J.H. (1977) A review of the Australian and New Zealand Orbiniidae (Annelida: Polychaeta). In: Essays on Polychaetous Annelids in Memory of Dr. Olga Hartman. Allan Hancock Found, Los Angeles, California, pp. 217-246.
- Dean, H.K. & Blake, J.A. (2015) The Orbiniidae (Annelida: Polychaeta) of Pacific Costa Rica. Zootaxa, 3956 (2), 183-198. https://doi.org/10.11646/zootaxa.3956.2.2
- DeBiasse, M.B., Nelson, B.J. & Hellberg, M.E. (2014) Evaluating summary statistics used to test for incomplete lineage sorting: mito-nuclear discordance in the reef sponge Callyspongia vaginalis. Molecular Ecology, 23 (1), 225-238. https://doi.org/10.1111/mec.12584
- Degnan, J.H. & Rosenberg, N.A. (2009) Gene tree discordance, phylogenetic inference and the multispecies coalescent. Trends in ecology & evolution, 24 (6), 332-340. https://doi.org/10.1016/j.tree.2009.01.009
- Drennan, R., Wiklund, H., Rouse, G.W., Georgieva, M.N., Wu, X., Kobayashi, G., Yoshino, K. & Glover, A.G. (2019) Taxonomy and phylogeny of mud owls (Annelida: Sternaspidae), including a new synonymy and new records from the Southern Ocean, North East Atlantic Ocean and Pacific Ocean: challenges in morphological delimitation. Marine Biodiversity, 49, 2659-2697. https://doi.org/10.1007/s12526-019-00998-0
- Elgetany, A.H., van Rensburg, H., Hektoen, M., Matthee, C., Budaeva, N., Simon, C.A. & Struck, T.H. (2020) Species delineation in the speciation grey zone -The case of Diopatra (Annelida, Onuphidae). Zoologica Scripta, 49 (4), 516-534. https://doi.org/10.1111/zsc.12421
- Fabricius, O. (1780) Fauna Groenlandica: systematice sistens animalia Groenlandiae occidentalis hactenus indagata, quoad nomen specificum, triviale, vernaculumque: synonyma auctorum plurium, descriptionem, locum, victum, generationem, mores, usum, capturamque singuli, prout detegendi occasio fuit: maximaque parte secundum proprias observationes. Impensis Ioannis Gottlob Rothe, Hafniae, XIV + 450 pp. https://doi.org/10.5962/bhl.title.13489
- Formaggioni, A., Plazzi, F. & Passamonti, M. (2022) Mito-nuclear coevolution and phylogenetic artifacts: the case of bivalve mollusks. Scientific Reports, 12 (1), 11040. https://doi.org/10.1038/s41598-022-15076-y
- Gee, H. (2003) Ending incongruence. Nature, 425 (6960), 782-782. https://doi.org/10.1038/425782a
- Glasby, C.J., Erseus, C. & Martin, P. (2021) Annelids in extreme aquatic environments: Diversity, adaptations and evolution. Diversity, 13 (2), 1-23. https://doi.org/10.3390/d13020098
- Grosse, M., Bakken, T., Nygren, A., Kongsrud, J.A. & Capa, M. (2020) Species delimitation analyses of NE Atlantic Chaetozone (Annelida, Cirratulidae) reveals hidden diversity among a common and abundant marine annelid. Molecular phylogenetics and evolution, 149, 106852. https://doi.org/10.1016/j.ympev.2020.106852
- Grube, A.E. (1855) Beschreibungen neuer oder wenig bekannter Anneliden. Archiv fur Naturgeschichte, Berlin, 21, 81-128. https://doi.org/10.5962/bhl.part.13989
- Hartman, O. (1942) A review of the types of polychaetous annelids at the Peabody Museum of Natural History, Yale University. Bulletin of the Bingham Oceanographic Collections, 8, 1-98.
- Hartman, O. (1951) The littoral marine annelids of the Gulf of Mexico. Publications of the Institute of Marine Science, University of Texas, 2, 7-124.
- Hartman, O. (1957) Orbiniidae, Apistobranchidae, Paraonidae and Logosomidae. Allan Hancock Pacific Expeditions, 15 (3), 211-393, pls. 20-44.
- Hillis, D.M. & Dixon, M.T. (1991) Ribosomal DNA: molecular evolution and phylogenetic inference. The Quarterly review of biology, 66 (4), 411-453. https://doi.org/10.1086/417338
- Hirano, T., Saito, T., Tsunamoto,Y., Koseki, J., Ye, B., Do, V.T, Miura, O., Suyama, Y. & Chiba, S. (2019) Enigmatic incongruence between mtDNA and nDNA revealed by multi-locus phylogenomic analyses in freshwater snails. Scientific Reports, 9 (1), 1-13. https://doi.org/10.1038/s41598-019-42682-0
- Hoang, D.T., Chernomor, O., Von Haeseler, A., Minh, B.Q. & Vinh, L.S. (2018) UFBoot2: improving the ultrafast bootstrap approximation. Molecular biology and evolution, 35 (2), 518-522. https://doi.org/10.1093/molbev/msx281
- Hutchings, P. & Kupriyanova, E. (2018) Cosmopolitan polychaetes -Fact or fiction? Personal and historical perspectives. Invertebrate systematics, 32 (1), 1-9. https://doi.org/10.1071/IS17035
- Kalyaanamoorthy, S., Minh, B.Q., Wong, T.K., Von Haeseler, A. & Jermiin, L.S. (2017) ModelFinder: fast model selection for accurate phylogenetic estimates. Nature methods, 14 (6), 587-589. https://doi.org/10.1038/nmeth.4285
- Katoh, K., Kuma, K.I., Toh, H. & Miyata, T. (2005) MAFFT version 5: Improvement in accuracy of multiple sequence alignment. Nucleic Acids Research, 33, 511-518. https://doi.org/10.1093/nar/gki198
- Khedhri, I., Lavesque, N., Bonifacio, P., Djabou, H. & Afli, A. (2014) First record of Naineris setosa (Verrill, 1900) (Annelida: Polychaeta: Orbiniidae) in the Western Mediterranean Sea. BioInvasions Records, 3 (2), 83-88. https://doi.org/10.3391/bir.2014.3.2.05
- Kinberg, J.G.H. (1867) Annulata nova. Ofversight af Kungliga Vetenskaps-Adakemiens Forhandlingar, Stockholm, 22, 239- 258.
- Kolbasova, G. & Neretina, T. (2021) A new species of Pelagobia (Lopadorrhynchidae, Annelida), with some notes on literature records of Pelagobia longicirrata Greeff, 1879. Zootaxa, 5023 (1), 77-92. https://doi.org/10.11646/zootaxa.5023.1.4
- Kumar, S., Stecher, G., Li, M., Knyaz, C. & Tamura, K. (2018) MEGA X: molecular evolutionary genetics analysis across computing platforms. Molecular biology and evolution, 35 (6), 1547. https://doi.org/10.1093/molbev/msy096
- Kvist, S. (2016) Does a global DNA barcoding gap exist in Annelida? Mitochondrial DNA Part A, 27 (3), 2241-2252. https://doi.org/10.3109/19401736.2014.984166
- Leigh, J.W. & Bryant, D. (2015) POPART: full-feature software for haplotype network construction. Methods in ecology and evolution, 6 (9), 1110-1116. https://doi.org/10.1111/2041-210X.12410
- Lio, P. & Goldman, N. (1998) Models of molecular evolution and phylogeny. Genome research, 8 (12), 1233-1244. https://doi.org/10.1101/gr.8.12.1233
- Liu, Y., Fend, S. V., Martinsson, S., Luo, X., Ohtaka, A. & Erseus, C. (2017) Multi-locus phylogenetic analysis of the genus Limnodrilus (Annelida: Clitellata: Naididae). Molecular Phylogenetics and Evolution, 112, 244-257. https://doi.org/10.1016/j.ympev.2017.04.019
- Liu, P., Xu, L., Xu, S. L., Martinez, A., Chen, H., Cheng, D., Dumont, H., Han, B-P. & Fontaneto, D. (2018) Species and hybrids in the genus Diaphanosoma Fischer, 1850 (Crustacea: Branchiopoda: Cladocera). Molecular phylogenetics and evolution, 118, 369-378. https://doi.org/10.1016/j.ympev.2017.10.016
- Martinsson, S., Klinth, M. & Erseus, C. (2020) Testing species hypotheses for Fridericia magna, an enchytraeid worm (Annelida: Clitellata) with great mitochondrial variation. BMC Evolutionary Biology, 20 (1), 1-12. https://doi.org/10.1186/s12862-020-01678-5
- Meyer,A., Bleidorn, C., Rouse, G.W. & Hausen, H. (2008) Morphological and molecular data suggest a cosmopolitan distribution of the polychaete Proscoloplos cygnochaetus Day, 1954 (Annelida, Orbiniidae). Marine Biology, 153, 879-889. https://doi.org/10.1007/s00227-007-0860-4
- Minh, B.Q., Schmidt, H.A., Chernomor, O., Schrempf, D., Woodhams, M.D., Von Haeseler, A. & Lanfear, R. (2020) IQ-TREE 2: new models and efficient methods for phylogenetic inference in the genomic era. Molecular biology and evolution, 37 (5), 1530-1534. https://doi.org/10.1093/molbev/msaa015
- Muller, F. (1858) Einiges uber die Annelidenfauna der Insel Santa Catharina an der brasilianischen Kuste. Archiv fur Naturgeschichte, 24 (1), 211-220.
- Nonato, E.F. (1981) Contribuicao ao conhecimento dos anelideos poliquetas bentonicos da Plataforma Continental Brasileira, entre Cabo Frio e o Arroio Chui. Livre Docencia Thesis, Universidade de Sao Paulo, Sao Paulo, 246 pp.
- Nonato, E.F., Bolivar, G.A. & Lana, P. (1986) Laonice branchiata, a new species of Spionidae (Annelida; Polychaeta) from the southeastern Brazilian coast. Revista Neritica, 1 (3), 22-25. https://doi.org/10.5380/rn.v1i3.41193
- Ortiz, D., Pekar, S., Bilat, J. & Alvarez, N. (2021) Poor performance of DNA barcoding and the impact of RAD loci filtering on the species delimitation of an Iberian ant-eating spider. Molecular phylogenetics and evolution, 154, 106997. https://doi.org/10.1016/j.ympev.2020.106997
- Palumbi, S.R., Martin, A., Romano, S., McMillan, W.O., Stice, L. & Grabowski, G. (1991) The simple fool's guide to PCR, Special Publication. Department of Zoology and Kewalo Marine Laboratory, University of Hawaii, Honolulu, 28 pp.
- Qiu, P. L., Liu, S. Y., Bradshaw, M., Rooney-Latham, S., Takamatsu, S., Bulgakov, T. S., Tang, S.R., Feng, J., Aroge, T., Li, Y., Wang, L.L. & Braun, U. (2020) Multi-locus phylogeny and taxonomy of an unresolved, heterogeneous species complex within the genus Golovinomyces (Ascomycota, Erysiphales), including G. ambrosiae, G. circumfusus and G. spadiceus. BMC microbiology, 20, 1-16. https://doi.org/10.1186/s12866-020-01731-9
- Radashevsky, V.I. & Lana, P. (2009) Laonice (Annelida: Spionidae) from South and Central America. Zoosymposia, 2, 265- 295. https://doi.org/10.11646/zoosymposia.2.1.19
- Radashevsky, V.I., Malyar, V.V., Pankova, V.V., Gambi, M.C., Giangrande,A., Keppel, E., Nygren, A., Al-Kandari, M. & Carlton, J.T. (2020) Disentangling invasions in the sea: molecular analysis of a global polychaete species complex (Annelida: Spionidae: Pseudopolydora paucibranchiata). Biological Invasions, 22 (12), 3621-3644. https://doi.org/10.1007/s10530-020-02346-x
- Rebai, N., Mosbahi, N., Dauvin, J.C. & Neifar, L. (2022) Ecological Risk Assessment of Heavy Metals and Environmental Quality of Tunisian Harbours. Journal of Marine Science and Engineering, 10 (11), 1625. https://doi.org/10.3390/jmse10111625
- Rioja, E. (1960) Estudios anelidologicos. XXIV. Adiciones a la fauna de Anelidos Poliquetos de las costas orientales de Mexico. Anales Del Instituto de Biologia, Mexico, 31, 289-316.
- Rokas, A., Williams, B.L., King, N. & Carroll, S.B. (2003) Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature, 425 (6960), 798-804. https://doi.org/10.1038/nature02053
- Salicini, I., Ibanez, C. & Juste, J. (2011) Multilocus phylogeny and species delimitation within the Natterer's bat species complex in the Western Palearctic. Molecular Phylogenetics and Evolution, 61 (3), 888-898. https://doi.org/10.1016/j.ympev.2011.08.010
- Seixas, V.C., Steiner, T.M., Sole-Cava, A.M., Amaral, A.C.Z. & Paiva, P.C. (2021) Hidden diversity within the Diopatra cuprea complex (Annelida: Onuphidae): Morphological and genetics analyses reveal four new species in the south-west Atlantic. Zoological Journal of The Linnean Society, 191 (3), 637-671. https://doi.org/10.1093/zoolinnean/zlaa032
- Solis-Weiss, V. & Fauchald, K. (1989) Orbiniidae (Annelida: Polychaeta) from mangrove root-mats in Belize, with a revision of the protoariciin genera. Proceedings of the Biological Society of Washington, 102 (3), 772-792.
- Struck, T. H., Golombek, A., Hoesel, C., Dimitrov, D. & Elgetany, A.H. (2023) Mitochondrial Genome Evolution in Annelida - A Systematic Study on Conservative and Variable Gene Orders and the Factors Influencing its Evolution. Systematic Biology, syad023. https://doi.org/10.1093/sysbio/syad023
- Taboada, S., Riesgo, A., Bas, M., Arnedo, M. A., Cristobo, J., Rouse, G.W. & Avila, C. (2015) Bone-eating worms spread: insights into shallow-water Osedax (Annelida, Siboglinidae) from Antarctic, Subantarctic, and Mediterranean waters. PLoS One, 10 (11), e0140341. https://doi.org/10.1371/journal.pone.0140341
- Taboada, S., Leiva, C., Bas, M., Schult, N. & McHugh, D. (2017) Cryptic species and colonization processes in Ophryotrocha (Annelida, Dorvilleidae) inhabiting vertebrate remains in the shallow-water Mediterranean. Zoologica Scripta, 46 (5), 611-624. https://doi.org/10.1111/zsc.12239
- Tamura, K., Stecher, G. & Kumar, S. (2021) MEGA11: molecular evolutionary genetics analysis version 11. Molecular Biology and Evolution, 38 (7), 3022-3027. https://doi.org/10.1093/molbev/msab120
- Toews, D.P. & Brelsford, A. (2012) The biogeography of mitochondrial and nuclear discordance in animals. Molecular ecology, 21 (16), 3907-3930. https://doi.org/10.1111/j.1365-294X.2012.05664.x
- Treadwell, A.L. (1901) The polychaetous annelids of Porto Rico. Bulletin of the United States National Fish Commission, 20 (2), 183-210.
- Treadwell, A.L. (1936) Polychaetous annelids from the vicinity of Nonsuch Island, Bermuda. Zoologica, 21 (1), 49-68. https://doi.org/10.5962/p.190351
- Treadwell, A.L. (1939) Polychaetous annelids from Porto Rico and vicinity. In: Scientific Survey of Porto Rico and the Virgin Islands. Vol. 16. New York Academy of Sciences, New York, New York, pp. 151-319.
- Verril, A.E. (1900) Additions to the Turbellaria, Nemertina and Annelida of the Bermudas, with revisions of some New England genera and species. Transactions of the Connecticut Academy of Arts and Sciences, 10, 595-671. https://doi.org/10.5962/bhl.part.7035
- Zhadan, A., Stupnikova, A. & Neretina, T. (2015) Orbiniidae (Annelida: Errantia) from Lizard Island, Great Barrier Reef, Australia with notes on orbiniid phylogeny. Zootaxa, 4019 (1), 773-801. https://doi.org/10.11646/zootaxa.4019.1.27
- Zhadan, A. (2020) Review of Orbiniidae (Annelida, Sedentaria) from Australia. Zootaxa, 4860 (4), 451-502. https://doi.org/10.11646/zootaxa.4860.4.1
- Zhang, J., Kapli, P., Pavlidis, P. & Stamatakis, A. (2013) A general species delimitation method with applications to phylogenetic placements. Bioinformatics, 29 (22), 2869-2876. https://doi.org/10.1093/bioinformatics/btt499